Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_37540Conserved hypothetical protein. (203 aa)    
Predicted Functional Partners:
topA
Candidate type IA DNA topoisomerase.
       0.532
Rta_11980
Conserved hypothetical protein.
 
     0.525
Rta_11990
Conserved hypothetical protein.
 
     0.509
Rta_36920
Conserved hypothetical protein.
   
  
 0.507
Rta_23440
DNA-binding ferritin-like protein-like protein; Belongs to the Dps family.
  
  
 0.481
Rta_36250
DNA-binding ferritin-like protein-like protein; Belongs to the Dps family.
  
  
 0.481
Rta_24970
Serine protein kinase-like protein.
   
    0.467
katE
Candidate hydroperoxidase II.
  
  
 0.446
katE-3
Candidate hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.446
sodC
Candidate superoxide dismutase [Cu, Zn], precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
  
 0.416
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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