Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_37650Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (284 aa)    
Predicted Functional Partners:
Rta_37660
Conserved hypothetical protein.
 
   
 0.930
Rta_04100
Conserved hypothetical protein.
 
     0.693
Rta_23080
Conserved hypothetical protein.
 
     0.642
Rta_35580
Transcriptional regulator, AraC family-like protein.
  
     0.621
Rta_37700
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
 
   0.590
Rta_11260
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
 
   0.557
Rta_30410
Polyketide synthase-like protein.
  
 
 0.515
Rta_37640
Candidate membrane efflux protein.
       0.508
Rta_19650
Candidate membrane protein.
  
     0.467
alkK
Candidate medium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase).
 
 
 
 0.450
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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