Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_37660Conserved hypothetical protein. (491 aa)    
Predicted Functional Partners:
Rta_37650
Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.930
Rta_04100
Conserved hypothetical protein.
 
     0.654
atpG
Candidate F-ATPase, gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.637
atpC
Candidate F-ATPase, epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.633
atpA
Candidate F-ATPase, alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.624
atpB
Candidate F-ATPase, A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
    
   0.622
Rta_23080
Conserved hypothetical protein.
 
     0.614
Rta_11750
Candidate Co/Zn/Cd cation transporter.
  
    0.565
Rta_30410
Polyketide synthase-like protein.
  
 
 0.561
Rta_37640
Candidate membrane efflux protein.
       0.508
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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