Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_38040Methionine biosynthesis protein MetW-like protein. (194 aa)    
Predicted Functional Partners:
metX
Homoserine transacetylase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
  
 0.998
thrB
Candidate homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
     0.668
chrA-3
Candidate chromate transport protein, full length.
     
 0.543
Rta_38030
Conserved hypothetical protein.
     
 0.538
hyi
Candidate hydroxypyruvate isomerase; Belongs to the hyi family.
       0.522
Rta_37990
L-fuculose phosphate aldolase (L-fuculose-1-phosphate aldolase)-like protein.
     
 0.521
Rta_38010
UDP-galactose 4-epimerase.
     
 0.519
Rta_38000
Conserved hypothetical protein.
       0.515
Rta_38060
Candidate membrane protein.
       0.478
Rta_14560
Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).
  
  
 0.436
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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