Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_38110Phosphoglycolate phosphatase-like protein. (247 aa)    
Predicted Functional Partners:
Rta_38100
Candidate membrane protein; Belongs to the UbiA prenyltransferase family.
 
    0.927
Rta_28620
Phosphoglycolate phosphatase-like protein.
    
 0.907
gph-2
Candidate phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.907
glcE
Candidate Glycolate oxidase subunit.
     
 0.900
gclF
Candidate Glycolate oxidase iron-sulfur subunit.
    
  0.900
Rta_06660
D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein.
     
 0.900
tkrA-2
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.900
glcD
Candidate glycolate oxidase subunit glcD.
     
 0.900
Rta_38090
Candidate membrane protein.
       0.773
Rta_38120
Candidate membrane protein.
 
     0.718
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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