STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ69798.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (348 aa)    
Predicted Functional Partners:
SIR35651.1
Bax protein.
 
     0.778
SIQ66719.1
Predicted acyltransferase, LPLAT superfamily.
  
 
 0.697
SIR34054.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.675
SIQ50847.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.673
SIR11634.1
Quaternary ammonium compound-resistance protein SugE.
  
 
 0.643
SIQ69818.1
Multidrug resistance protein, MATE family.
       0.622
SIR40792.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     
 0.617
SIR41064.1
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.617
SIR41131.1
Arabinan endo-1,5-alpha-L-arabinosidase.
     
 0.617
SIR31880.1
Outer membrane protein.
  
     0.575
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.