STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ71070.1RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (349 aa)    
Predicted Functional Partners:
macB
Macrolide transport system ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.988
SIQ71101.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.974
SIR31862.1
Outer membrane protein.
 
 0.967
SIQ44884.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.915
SIR07244.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.910
SIQ99946.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.905
SIR07853.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.828
SIQ70619.1
Multidrug efflux pump.
 
  0.820
SIQ78644.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.816
SIQ44741.1
Multidrug efflux pump.
 
  0.796
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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