STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ87152.1Protein of unknown function. (198 aa)    
Predicted Functional Partners:
SIR06989.1
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.
   
    0.714
SIQ94936.1
Regulator of RpoD, Rsd/AlgQ; Belongs to the Rsd/AlgQ family.
  
     0.651
SIQ87174.1
tRNA-(ms[2]io[6]A)-hydroxylase.
 
     0.561
SIR31827.1
Hypothetical protein.
  
     0.547
SIQ69524.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.543
SIQ56407.1
Protein of unknown function.
  
     0.500
SIR01952.1
MSHA pilin protein MshB.
  
     0.483
SIR28796.1
Protein of unknown function.
  
     0.483
SIR07613.1
Nucleoid-associated protein.
  
     0.466
SIQ54949.1
Uncharacterized conserved protein YqcC, DUF446 family.
  
     0.425
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.