STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR01992.1MSHA biogenesis protein MshG. (406 aa)    
Predicted Functional Partners:
SIR02014.1
MSHA biogenesis protein MshE.
 
 
 0.996
SIR02077.1
MSHA biogenesis protein MshL.
 
  
 0.967
SIQ95327.1
Type IV pilus assembly protein PilB.
 
 
 0.963
SIR33491.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.963
SIR02155.1
MSHA biogenesis protein MshI.
 
 
 
 0.940
SIR02136.1
Hypothetical protein.
 
 
 
 0.934
SIR01952.1
MSHA pilin protein MshB.
 
  
 0.923
SIR01929.1
MSHA pilin protein MshA.
 
  
 0.889
SIQ95382.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.888
SIR02116.1
MSHA biogenesis protein MshJ.
 
  
 0.865
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.