STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR02014.1MSHA biogenesis protein MshE. (586 aa)    
Predicted Functional Partners:
SIR01992.1
MSHA biogenesis protein MshG.
 
 
 0.996
SIQ95353.1
Type IV pilus assembly protein PilC.
 
 
 0.963
SIR33472.1
Type II secretion system protein F (GspF).
 
 
 0.963
SIR02077.1
MSHA biogenesis protein MshL.
 
  
 0.961
SIR02136.1
Hypothetical protein.
 
 
 
 0.951
SIR01952.1
MSHA pilin protein MshB.
 
 0.935
SIR02155.1
MSHA biogenesis protein MshI.
 
 
 
 0.930
SIR33340.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.927
SIQ95382.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.894
SIR01929.1
MSHA pilin protein MshA.
 
 0.891
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.