STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR09487.1Uncharacterized protein. (338 aa)    
Predicted Functional Partners:
SIR09511.1
Hypothetical protein.
 
  
 0.981
SIR09468.1
Protein of unknown function.
 
  
 0.974
SIR09450.1
Protein of unknown function.
 
    0.960
SIR11798.1
Extracellular lipase, Pla-1/cef family.
 
    0.556
SIR22006.1
Alanine-synthesizing transaminase.
    
  0.461
SIQ58096.1
Chorismate mutase /prephenate dehydrogenase.
     
 0.457
SIR09532.1
Glutamate dehydrogenase (NAD).
       0.447
SIQ49341.1
Anti-sigma-28 factor, FlgM family.
  
     0.427
SIQ88275.1
Tetratricopeptide repeat-containing protein.
  
     0.426
SIQ55062.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.