STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR28796.1Protein of unknown function. (137 aa)    
Predicted Functional Partners:
SIQ56407.1
Protein of unknown function.
  
     0.774
SIQ47435.1
Protein of unknown function.
  
     0.773
SIQ94736.1
Hypothetical protein.
  
     0.770
SIR08669.1
Protein of unknown function.
  
     0.768
SIR20428.1
Hypothetical protein.
  
     0.750
SIR45247.1
Protein of unknown function.
  
     0.746
SIQ80016.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.738
SIR11798.1
Extracellular lipase, Pla-1/cef family.
  
     0.735
SIQ55062.1
Hypothetical protein.
  
     0.722
SIR26210.1
Hypothetical protein.
  
     0.721
Your Current Organism:
Shewanella morhuae
NCBI taxonomy Id: 365591
Other names: NBRC 100978, S. morhuae, Shewanella morhuae Satomi et al. 2006 emend. Thorell et al. 2019, strain U1417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.