Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
trkA1Potassium uptake protein; COG0569, TrkA, K+ transport system, NAD-binding component. (221 aa)    
Predicted Functional Partners:
trkG1
Potassium uptake protein; COG0168, TrkG, Trk-type K+ transport system, membrane component.
 
 
 0.997
trkG2
Potassium uptake protein; COG0168, TrkG, Trk-type K+ transport system, membrane component.
  
 
 0.701
smi_0087
Conserved hypothetical protein; COG2820, similar to uridine phosphorylase.
     
 0.680
smi_1624
rRNA-specific 5-methylcytidine transferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.536
smi_0670
Ferredoxin; COG1141.
      
 0.524
gidB
Methyltransferase GidB (glucose inhibited division protein B); Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
   
   0.488
htpX
Heat shock protein, protease HtpX; COG0501, Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.
       0.461
lemA
Cytoplasmic membrane protein LemA; Pfam04011.
       0.461
smi_0734
ABC transporter permease-phosphate transport.
     
 0.454
CBJ21388.1
Unnamed protein product; hypothetical protein.
       0.435
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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