smi_0204 protein (Streptococcus mitis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

smi_0204

Conserved hypothetical protein. (121 aa)

Predicted Functional Partners:

cglB

0.900

cglC

0.811

cglA

0.800

smi_0213

0.758

smi_0209

0.747

smi_0210

0.747

cglD

0.746

smi_0211

0.746

smi_2078

0.700

smi_1121

0.650

Your Current Organism:

Streptococcus mitis

NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cglA	cglB	smi_0205	smi_0206	Competence protein.	Competence protein.	0.999
cglA	cglC	smi_0205	smi_0207	Competence protein.	Competence protein.	0.995
cglA	cglD	smi_0205	smi_0208	Competence protein.	Competence protein.	0.937
cglA	smi_0204	smi_0205	smi_0204	Competence protein.	Conserved hypothetical protein.	0.800
cglA	smi_0209	smi_0205	smi_0209	Competence protein.	Conserved hypothetical protein.	0.955
cglA	smi_0210	smi_0205	smi_0210	Competence protein.	Conserved hypothetical protein; Competence protein.	0.971
cglA	smi_0211	smi_0205	smi_0211	Competence protein.	Conserved hypothetical protein.	0.907
cglA	smi_0213	smi_0205	smi_0213	Competence protein.	Conserved hypothetical protein.	0.647
cglB	cglA	smi_0206	smi_0205	Competence protein.	Competence protein.	0.999
cglB	cglC	smi_0206	smi_0207	Competence protein.	Competence protein.	0.996
cglB	cglD	smi_0206	smi_0208	Competence protein.	Competence protein.	0.931
cglB	smi_0204	smi_0206	smi_0204	Competence protein.	Conserved hypothetical protein.	0.900
cglB	smi_0209	smi_0206	smi_0209	Competence protein.	Conserved hypothetical protein.	0.954
cglB	smi_0210	smi_0206	smi_0210	Competence protein.	Conserved hypothetical protein; Competence protein.	0.983
cglB	smi_0211	smi_0206	smi_0211	Competence protein.	Conserved hypothetical protein.	0.865
cglB	smi_0213	smi_0206	smi_0213	Competence protein.	Conserved hypothetical protein.	0.779
cglC	cglA	smi_0207	smi_0205	Competence protein.	Competence protein.	0.995
cglC	cglB	smi_0207	smi_0206	Competence protein.	Competence protein.	0.996
cglC	cglD	smi_0207	smi_0208	Competence protein.	Competence protein.	0.931
cglC	smi_0204	smi_0207	smi_0204	Competence protein.	Conserved hypothetical protein.	0.811