Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
araDL-ribulose 5-phosphate 4-epimerase. (235 aa)    
Predicted Functional Partners:
sga
Hexulose-6-phosphate isomerase.
 
 0.997
sgh
Hexulose-6-phosphate synthase (HumpS).
 
  
 0.956
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.930
smi_0221
Phosphotransferase system sugar-specific EII component.
  
  
 0.850
smi_0220
Phosphotransferase system sugar-specific EII component.
 
  
 0.794
fruA
PTS system, fructose specific IIBC component.
  
  
 0.744
smi_0219
Phosphotransferase system sugar-specific EII component.
  
  
 0.731
smi_0226
Conserved hypothetical protein.
 
   
 0.704
smi_0225
Conserved hypothetical protein; Transcriptional regulator, BglG family.
       0.694
xylH
4-oxalocrotonate tautomerase.
     
 0.468
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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