rpmGB protein (Streptococcus mitis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

rpmGB

50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (50 aa)

Predicted Functional Partners:

rpsI

0.982

rpmF

0.962

rplL

0.957

secE

0.956

rpmB

0.942

rpmD

0.938

rpsN

0.932

rplX

0.932

rpsO

0.930

rpsT

0.930

Your Current Organism:

Streptococcus mitis

NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplL	rplX	smi_0784	smi_1894	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.980
rplL	rpmB	smi_0784	smi_1828	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.960
rplL	rpmD	smi_0784	smi_1887	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	50S ribosomal protein L30.	0.977
rplL	rpmF	smi_0784	smi_0106	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.991
rplL	rpmGB	smi_0784	smi_0236	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.957
rplL	rpsI	smi_0784	smi_1796	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.987
rplL	rpsN	smi_0784	smi_1892	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.977
rplL	rpsO	smi_0784	smi_0656	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.970
rplL	rpsT	smi_0784	smi_0882	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.960
rplL	secE	smi_0784	smi_0237	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	Preprotein translocase secE component, COG0690; Belongs to the SecE/SEC61-gamma family.	0.746
rplX	rplL	smi_1894	smi_0784	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.980
rplX	rpmB	smi_1894	smi_1828	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.990
rplX	rpmD	smi_1894	smi_1887	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L30.	0.999
rplX	rpmF	smi_1894	smi_0106	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplX	rpmGB	smi_1894	smi_0236	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.932
rplX	rpsI	smi_1894	smi_1796	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rplX	rpsN	smi_1894	smi_1892	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.999
rplX	rpsO	smi_1894	smi_0656	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.987
rplX	rpsT	smi_1894	smi_0882	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.980
rplX	secE	smi_1894	smi_0237	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	Preprotein translocase secE component, COG0690; Belongs to the SecE/SEC61-gamma family.	0.814