Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amiEABC transporter ATP-binding protein-oligopeptide transport; Belongs to the ABC transporter superfamily. (355 aa)    
Predicted Functional Partners:
amiC
ABC transporter membrane-spanning permease-oligopeptide transport.
 
 0.999
amiD
ABC transporter membrane-spanning permease-oligopeptide transport.
 0.999
amiF
ABC transporter ATP-binding protein-oligopeptide transport; Belongs to the ABC transporter superfamily.
 
 
0.997
amiA
ABC transporter substrate-binding protein-oligopeptide transport.
 
 
 0.993
smi_0291
Substrate-binding lipoprotein, oligopeptide transport.
 
 
 0.984
smi_0907
ABC transporter substrate-binding lipoprotein-oligopeptide transport; COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component; pfam00496, SBP_bac_5, bacterial extracellular solute-binding proteins.
 
 
 0.984
aliA
ABC transporter substrate binding lipoprotein-oligopeptide transport; COG4166, OppA, ABC-type oligopeptide transport system.
 
 
 0.984
aliB
ABC-type oligopeptide transport, substrate binding lipoprotein; COG4166.
 
 
 0.984
aliA-2
COG4166, ABC-type oligopeptide transport system.
 
 
 0.984
smi_1592
ABC transporter ATP-binding protein multiple sugar transport; COG3839; Belongs to the ABC transporter superfamily.
 
     
0.604
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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