Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_0462Tail length tape measure protein. (818 aa)    
Predicted Functional Partners:
smi_0466
Hypothetical protein.
 
   0.980
smi_0467
Uncharacterized homolog of phage Mu protein gp47; COG3299.
 
 
   0.970
smi_0463
Uncharacterized protein containing LysM domain; COG1652.
 
 
   0.962
smi_0459
Sheath tail protein.
 
   0.945
smi_0464
Conserved hypothetical protein.
 
     0.945
smi_0444
Ser protein kinase, similar to phage Spp1 gp6 (portal protein) [Bacteriophage phi ETA]; COG2766.
 
   0.886
smi_0461
Conserved hypothetical protein.
 
     0.883
smi_0460
Core tail protein.
 
     0.880
Pi2
Prophage pi2 protein.
 
     0.868
smi_0451
Methyl-accepting chemotaxis protein scaffolding protein; COG0840.
 
     0.834
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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