Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
smi_0467Uncharacterized homolog of phage Mu protein gp47; COG3299. (351 aa)    
Predicted Functional Partners:
smi_0466
Hypothetical protein.
 
 
 0.994
smi_0463
Uncharacterized protein containing LysM domain; COG1652.
 
 
 0.992
smi_0459
Sheath tail protein.
 
 
 0.990
smi_0462
Tail length tape measure protein.
 
 
   0.970
smi_0464
Conserved hypothetical protein.
 
    0.961
smi_0461
Conserved hypothetical protein.
 
  
 0.904
smi_0460
Core tail protein.
 
    0.903
Pi2
Prophage pi2 protein.
 
    0.891
smi_1978
Cd00118, LysM, Lysin domain.
  
   0.853
smi_0451
Methyl-accepting chemotaxis protein scaffolding protein; COG0840.
 
     0.845
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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