Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_0606Conserved hypothetical protein. (150 aa)    
Predicted Functional Partners:
smi_0609
N-acetylmannosamine kinase; transcriptional regulator, ROK family protein.
 
    0.762
smi_0607
Conserved hypothetical protein.
       0.714
smi_0608
N-acetylneuraminate lyase.
 
  
 0.701
smi_0603
ABC transporter, sugar transporter, sugar binding lipoprotein-N-acetylneuraminate-binding protein.
 
     0.671
smi_0605
ABC transporter-sugar transport, N-acetylneuraminate transport system permease.
 
     0.601
smi_0604
ABC transporter permease-sugar transport, N-acetylneuraminate transport system.
 
     0.553
smi_0794
N-acetylneuraminate lyase.
 
  
 0.508
smi_0600
Acetyl xylan esterase.
 
     0.489
smi_2021
Beta-galactosidase/beta-glucuronidase, truncated; COG3250; Belongs to the glycosyl hydrolase 2 family.
 
 
   0.443
bgaA
Beta-galactosidase; LPXTG motif.
 
 
   0.434
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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