Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_0785Conserved hypothetical protein. (57 aa)    
Predicted Functional Partners:
smi_0786
Conserved hypothetical protein; Pfam06970, RepA_N, replication initiator protein A (RepA) N-terminus.
       0.859
smi_0788
Conserved hypothetical protein.
       0.675
smi_0789
Conserved hypothetical protein; COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin family.
       0.560
smi_0791
Metal-dependent CAAX amino terminal membrane protease family protein; Pfam02517.
       0.542
smi_0787
Methyl transferase.
       0.540
smi_0790
Conserved hypothetical protein.
       0.533
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
       0.467
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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