Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_1053Conserved hypothetical protein. (52 aa)    
Predicted Functional Partners:
smi_1052
Dihydroxyacetone kinase; COG2376, DAK1.
 
 
 0.998
smi_1051
Dihydroxyacetone kinase; COG2376, DAK1.
 
 
 0.921
smi_1049
COG2376, DAK1, dihydroxyacetone kinase.
 
 
 0.907
glpF
Glycerol uptake facilitator protein; Cd00333, major intrinsic protein (MIP) superfamily; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
    0.530
smi_1050
Transcriptional regulator.
 
     0.528
smi_1743
Conserved hypothetical protein; COG4758, membrane protein.
  
     0.431
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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