| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aspS | smi_1178 | smi_0127 | smi_1178 | aspartyl-tRNA synthetase (aspartate-tRNA ligase); Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.706 |
| dnaN | exoA | smi_0002 | smi_0530 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.936 |
| dnaN | smi_1178 | smi_0002 | smi_1178 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.807 |
| exoA | dnaN | smi_0530 | smi_0002 | Exodeoxyribonuclease III. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.936 |
| exoA | smi_1178 | smi_0530 | smi_1178 | Exodeoxyribonuclease III. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.923 |
| mutM | smi_1178 | smi_0971 | smi_1178 | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.689 |
| nadK | pta | smi_1181 | smi_1179 | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | Phosphotransacetylase; COG0280. | 0.903 |
| nadK | rluA3 | smi_1181 | smi_1180 | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.873 |
| nadK | smi_1178 | smi_1181 | smi_1178 | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.629 |
| nadK | smi_1183 | smi_1181 | smi_1183 | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | Conserved hypothetical protein; COG4116, uncharacterized protein. | 0.800 |
| pta | nadK | smi_1179 | smi_1181 | Phosphotransacetylase; COG0280. | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.903 |
| pta | rluA3 | smi_1179 | smi_1180 | Phosphotransacetylase; COG0280. | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.793 |
| pta | smi_1178 | smi_1179 | smi_1178 | Phosphotransacetylase; COG0280. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.661 |
| pta | smi_1183 | smi_1179 | smi_1183 | Phosphotransacetylase; COG0280. | Conserved hypothetical protein; COG4116, uncharacterized protein. | 0.548 |
| rluA3 | nadK | smi_1180 | smi_1181 | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Inorganic polyphosphate ADP/NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.873 |
| rluA3 | pta | smi_1180 | smi_1179 | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Phosphotransacetylase; COG0280. | 0.793 |
| rluA3 | smi_1178 | smi_1180 | smi_1178 | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.633 |
| rluA3 | smi_1183 | smi_1180 | smi_1183 | 23S rRNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Conserved hypothetical protein; COG4116, uncharacterized protein. | 0.733 |
| smi_1177 | smi_1178 | smi_1177 | smi_1178 | COG0745, response regulator, OmpR family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.714 |
| smi_1177 | vicX | smi_1177 | smi_1175 | COG0745, response regulator, OmpR family. | Conserved protein VicX; Pfam00753, metallo-beta-lactamase superfamily. | 0.958 |