Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
licBCholine transport protein. (292 aa)    
Predicted Functional Partners:
licA
Choline kinase.
 
  
 0.980
licC
CTP:phosphocholine cytidylyltransferase.
 
   
 0.972
tarJ
Alcohol dehydrogenase; Catalyzes the NADPH dependent reduction of D-ribulose 5- phosphate to D-ribitol 5-phosphate; Belongs to the zinc-containing alcohol dehydrogenase family.
 
   
 0.937
tarI
Cytidylyltransferase; Catalyzes the transfer of the cytidylyl group of CTP to D- ribitol 5-phosphate.
 
   
 0.926
licD3
Phosphorylcholine transferase LicD3; Pfam04991.
 
   
 0.882
tacF
Teichoic acid subunit flippase; COG2244, Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.751
smi_0598
Conserved hypothetical protein.
  
     0.739
smi_0047
Conserved hypothetical protein.
  
     0.735
zmpB
Zinc metalloprotease; LPXTG motif.
  
     0.732
smi_0034
Conserved hypothetical protein.
  
     0.730
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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