licA protein (Streptococcus mitis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

licA

Choline kinase. (262 aa)

Predicted Functional Partners:

licC

0.999

licB

0.980

tarJ

0.855

tarI

0.841

cbp5

0.764

cbp14

0.754

cbp3

0.747

cbp4

0.746

cbp1

0.744

cbp7

0.743

Your Current Organism:

Streptococcus mitis

NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbp1	cbp7	smi_0037	smi_0726	Choline binding protein Cbp1; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp7; COG5263, glucan binding domain (YG repeat).	0.769
cbp1	licA	smi_0037	smi_1226	Choline binding protein Cbp1; COG5263, glucan-binding domain (YG repeat).	Choline kinase.	0.744
cbp1	licB	smi_0037	smi_1225	Choline binding protein Cbp1; COG5263, glucan-binding domain (YG repeat).	Choline transport protein.	0.462
cbp1	licC	smi_0037	smi_1224	Choline binding protein Cbp1; COG5263, glucan-binding domain (YG repeat).	CTP:phosphocholine cytidylyltransferase.	0.523
cbp14	cbp3	smi_1875	smi_0055	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	0.774
cbp14	cbp4	smi_1875	smi_0057	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	0.773
cbp14	licA	smi_1875	smi_1226	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	Choline kinase.	0.754
cbp14	licB	smi_1875	smi_1225	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	Choline transport protein.	0.584
cbp14	licC	smi_1875	smi_1224	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	CTP:phosphocholine cytidylyltransferase.	0.646
cbp3	cbp14	smi_0055	smi_1875	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	0.774
cbp3	cbp7	smi_0055	smi_0726	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp7; COG5263, glucan binding domain (YG repeat).	0.771
cbp3	licA	smi_0055	smi_1226	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	Choline kinase.	0.747
cbp3	licB	smi_0055	smi_1225	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	Choline transport protein.	0.476
cbp3	licC	smi_0055	smi_1224	Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).	CTP:phosphocholine cytidylyltransferase.	0.564
cbp4	cbp14	smi_0057	smi_1875	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp14; COG5263, glucan-binding domain (YG repeat).	0.773
cbp4	cbp7	smi_0057	smi_0726	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	Choline binding protein Cbp7; COG5263, glucan binding domain (YG repeat).	0.770
cbp4	licA	smi_0057	smi_1226	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	Choline kinase.	0.746
cbp4	licB	smi_0057	smi_1225	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	Choline transport protein.	0.439
cbp4	licC	smi_0057	smi_1224	Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).	CTP:phosphocholine cytidylyltransferase.	0.545
cbp5	licA	smi_0402	smi_1226	Choline-binding protein Cbp5; COG5263, glucan-binding domain (YG repeat).	Choline kinase.	0.764