Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
smi_1297ABC transporter substrate binding lipoprotein-amino acid transport; COG0834. (279 aa)    
Predicted Functional Partners:
smi_1299
ABC transporter membrane-spanning permease-amino acid transport; COG0765.
 
 0.998
smi_0867
COG0765, HisM, ABC-type amino acid transport system, permease component.
 
 0.928
smi_1591
ABC-type amino acid transporter, membrane-spanning permease; COG0765.
 
 0.919
smi_1298
ABC transporter ATP-binding protein-amino acid transport; COG1126.
 
 
 0.910
smi_1590
ABC-type amino acid transporter, permease component; COG0765; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.887
smi_1382
ABC transporter membrane-spanning permease-aspartate/glutamate transport; COG0765, ABC-type amino acid transport system, permease component.
 
 0.880
glnQ
ABC transporter ATP-binding protein-glutamine transport; COG1126.
 
 
 0.867
smi_1436
ABC transporter membrane-spanning permease-amino acid transport; COG0765.
 
 0.829
smi_1437
ABC transporter membrane-spanning permease-amino acid transport; COG0765.
 
 0.800
smi_0868
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component.
 
 
 0.677
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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