Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
smi_1381ABC transporter ATP-binding protein-aspartate/glutamate transport; COG1126, ABC-type polar amino acid transport system, ATPase component. (247 aa)    
Predicted Functional Partners:
smi_1382
ABC transporter membrane-spanning permease-aspartate/glutamate transport; COG0765, ABC-type amino acid transport system, permease component.
 
 0.999
smi_1946
ABC transporter substrate-binding lipoprotein; Pfam00497, bacterial extracellular solute-binding proteins, duplication of smi_1945.
 
  0.918
smi_1945
ABC transporter substrate-binding lipoprotein; Pfam00497, bacterial extracellular solute-binding proteins.
 
  0.915
smi_0867
COG0765, HisM, ABC-type amino acid transport system, permease component.
 
 0.900
smi_1591
ABC-type amino acid transporter, membrane-spanning permease; COG0765.
 
 
 0.894
smi_1834
ABC transporter, permease and ATP-binding protein, multidrug export; COG1132, MdlB, ABC-type multidrug transport system.
 
     
0.880
smi_1436
ABC transporter membrane-spanning permease-amino acid transport; COG0765.
 
 
 0.870
smi_1590
ABC-type amino acid transporter, permease component; COG0765; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.868
smi_1299
ABC transporter membrane-spanning permease-amino acid transport; COG0765.
 
 0.860
glnP
ABC transporter membrane spanning permease-glutamine transport; COG0765.
 
 
 0.831
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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