Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_1513Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family. (63 aa)    
Predicted Functional Partners:
smi_0554
Conserved hypothetical protein.
 
    0.673
smi_0553
Conserved hypothetical protein.
 
   
 0.665
smi_1514
Conserved hypothetical protein.
       0.528
smi_1515
Conserved hypothetical protein.
       0.526
smi_0875
Conserved hypothetical protein.
  
     0.470
smi_0196
Conserved hypothetical protein; COG1388: LysM repeat; Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation.
  
     0.415
smi_0102
Conserved hypothetical protein; COG3853, toxic anion resistance protein.
  
     0.401
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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