Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
smi_1517Conserved hypothetical protein; COG2827, predicted endonuclease containing a URI domain. (98 aa)    
Predicted Functional Partners:
smi_1518
Conserved hypothetical protein; COG4123, O-methyltransferase; Belongs to the methyltransferase superfamily.
  
  
 0.930
smi_1519
Predicted RNA binding protein (contains ribosomal protein S1 domain); COG1098.
       0.771
smi_1520
Predicted hydrolases of the HAD superfamily; COG056.
       0.751
ppaC
Inorganic pyrophosphatase/exopolyphosphatase; COG1227.
       0.649
rsmI
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.495
celA
Competence protein CelA.
       0.458
celB
Competence protein CelB.
       0.421
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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