Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
smi_1541Conserved hypothetical protein. (531 aa)    
Predicted Functional Partners:
smi_1542
Predicted polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
       0.782
smi_1540
Conserved hypothetical protein.
       0.623
smi_1539
Conserved hypothetical protein; COG3022; Belongs to the UPF0246 family.
 
     0.556
smi_1543
Cation-transporting ATPase, E1-E2 family; COG0474.
       0.505
exoA
Exodeoxyribonuclease III.
       0.440
smi_0513
Conserved hypothetical protein; COG3307, RfaL, lipid A core - O-antigen ligase and related enzymes.
  
     0.406
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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