STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lytCCholine-binding protein LytC, 4-beta-N-acetylmuramidase, Cpb13; COG5263, COG3757. (536 aa)    
Predicted Functional Partners:
cbpD
Choline binding protein CbpD, amidase; COG5263, glucan-binding domain (YG repeat); pfam05257, CHAP domain. This domain corresponds to an amidase function.
  
   
 0.697
tpiA
Triose phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.670
cbpI
Aldose-1-epimerase (mutarotase); Authentic stop codon.
  
   
 0.586
cbp4
Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).
  
     0.573
cbp3
Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).
  
     0.565
cbp9
Choline-binding protein Cbp9; COG5263, glucan-binding domain (YG repeat).
  
     0.528
smi_1565
Conserved hypothetical protein.
       0.465
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.465
smi_1562
DPS family peroxide resistance protein; COG0783; Belongs to the Dps family.
       0.437
pavA
Adherence and virulence protein A.
      
 0.408
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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