STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_1585Esterase; COG0627. (259 aa)    
Predicted Functional Partners:
rnj
Conserved hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.757
smi_0334
Conserved hypothetical protein.
  
  
 0.686
fibB
Peptidoglycan branched peptide synthesis protein, femAB family; COG2348.
 
     0.610
smi_1345
Conserved hypothetical protein; Pfam00144, beta-lactamase.
     
 0.598
fibA
Peptidoglycan branched peptide synthesis protein, femAB family; COG2348.
 
     0.593
smi_0630
Conserved hypothetical protein.
  
   
 0.508
smi_1580
Conserved hypothetical protein; COG0622, predicted phosphoesterase.
  
  
 0.473
smi_0988
ABC transporter, substrate-binding protein; COG2984, ABC-type uncharacterized transport system.
       0.461
smi_1172
ABC transporter ATP-binding protein-unknown substrate; COG0488, ATPase components of ABC transporters with duplicated ATPase domains.
       0.461
sulD
Aldolase-pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.460
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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