Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cbp13COG5263, glucan-binding domain (YG repeat). (404 aa)    
Predicted Functional Partners:
cbp12
Choline binding protein cbp12; COG5263, glucan-binding domain (YG repeat).
 
    
0.795
cbp3
Choline binding protein Cbp3; COG5263, glucan-binding domain (YG repeat).
  
     0.771
cbp4
Choline binding protein Cbp4; COG5263, glucan-binding domain (YG repeat).
  
     0.770
cbp8
Choline-binding protein Cbp8; COG5263, glucan-binding domain (YG repeat).
  
     0.768
cbp9
Choline-binding protein Cbp9; COG5263, glucan-binding domain (YG repeat).
  
     0.768
cbpF
Choline binding protein CbpF; COG5263, glucan-binding domain (YG repeat).
  
     0.766
cbpI
Aldose-1-epimerase (mutarotase); Authentic stop codon.
  
     0.765
licA
Choline kinase.
  
     0.737
lytA
N-acetylmuramoyl-L-alanine amidase LytA; COG5263, glucan-binding domain (YG repeat).
  
     0.728
cbpD
Choline binding protein CbpD, amidase; COG5263, glucan-binding domain (YG repeat); pfam05257, CHAP domain. This domain corresponds to an amidase function.
  
     0.692
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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