Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_1866Pfam00583, acetyltransferase (GNAT) family. (138 aa)    
Predicted Functional Partners:
smi_1867
Pfam00583, acetyltransferase (GNAT) family.
  
    0.768
smi_1868
Conserved hypothetical protein.
       0.528
smi_1869
Transcriptional regulator; Pfam04397, LytTr DNA-binding domain.
       0.528
smi_1870
ABC tranporter, permease; COG0842, multidrug transport system.
       0.499
smi_1871
ABC tranporter, ATP-binding protein; COG1131, CcmA, multidrug transport system.
       0.499
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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