Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smi_1978Cd00118, LysM, Lysin domain. (206 aa)    
Predicted Functional Partners:
smi_0459
Sheath tail protein.
  
 
 0.878
smi_0467
Uncharacterized homolog of phage Mu protein gp47; COG3299.
  
   0.853
smi_0466
Hypothetical protein.
  
 
 0.819
smi_0196
Conserved hypothetical protein; COG1388: LysM repeat; Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation.
   
  
 0.672
smi_1562
DPS family peroxide resistance protein; COG0783; Belongs to the Dps family.
  
    0.498
sdaB
L-serine dehydratase, beta subunit; Pfam 03315; COG1760; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.463
sdaA
L-serine dehydratase, alpha subunit; Pfam03313; COG1760; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.460
smi_1981
Phosphatase; COG0637, predicted phosphatase.
       0.424
smi_0462
Tail length tape measure protein.
   
   0.414
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.