Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tauBCOG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (242 aa)    
Predicted Functional Partners:
tauA
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems.
 
 0.999
tauC
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 0.999
smi_2050
Conserved hypothetical protein.
 
    0.963
ctsR
Pfam05848, firmicute transcriptional repressor of class III stress genes (CtsR); Belongs to the CtsR family.
  
    0.549
clpC
COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
       0.546
smi_0684
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.516
smi_1849
Oxidoreductase; COG2141, flavin-dependent oxidoreductases.
  
  
 0.427
cbpD
Choline binding protein CbpD, amidase; COG5263, glucan-binding domain (YG repeat); pfam05257, CHAP domain. This domain corresponds to an amidase function.
       0.421
Your Current Organism:
Streptococcus mitis
NCBI taxonomy Id: 365659
Other names: S. mitis B6, Streptococcus mitis B6, Streptococcus mitis str. B6, Streptococcus mitis strain B6
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