STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_5G608350NAC domain-containing protein. (418 aa)    
Predicted Functional Partners:
Csa_3G122520
Dead box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 
 0.922
Csa_6G453810
Uncharacterized protein.
    
 
 0.862
Csa_3G889990
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
    
 
 0.748
Csa_6G405350
Nudix hydrolase domain-containing protein.
    
 
 0.731
Csa_5G622860
Nudix hydrolase domain-containing protein.
    
 
 0.731
Csa_6G124180
AP2/ERF domain-containing protein.
   
 
 0.573
Csa_6G012810
Dehydration-responsive element-binding protein 2C.
   
 
 0.573
Csa_6G433800
Uncharacterized protein.
   
 
 0.573
Csa_4G314390
AP2/ERF domain-containing protein.
   
 
 0.573
Csa_1G123500
Uncharacterized protein.
   
 
 0.573
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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