STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_5G643940DNA double-strand break repair rad50 ATPase. (1213 aa)    
Predicted Functional Partners:
Csa_5G154810
C2 NT-type domain-containing protein.
  
 
  0.556
Csa_4G049060
C2 NT-type domain-containing protein.
  
 
  0.550
Csa_3G881880
Uncharacterized protein.
  
 
 0.543
Csa_5G083300
Uncharacterized protein.
  
     0.482
Csa_3G914010
C2 NT-type domain-containing protein.
  
     0.479
Csa_3G599460
Uncharacterized protein.
  
     0.467
Csa_3G000080
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.458
Csa_5G011700
Uncharacterized protein.
  
   
 0.455
Csa_2G442260
Uncharacterized protein.
  
 
  0.439
Csa_3G748200
Uncharacterized protein.
    
 0.434
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.