STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_4G623380Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (248 aa)    
Predicted Functional Partners:
Csa_6G135990
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.981
Csa_1G589640
Uncharacterized protein.
  
 
 0.981
Csa_3G073850
Uncharacterized protein.
   
 
 0.977
Csa_3G098540
KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.
  
 0.976
Csa_1G153000
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.974
Csa_7G274150
Uncharacterized protein.
  
 
 0.972
Csa_4G095560
Uncharacterized protein.
   
 
 0.971
Csa_3G121660
Uncharacterized protein.
 
 0.971
Csa_5G198130
Uncharacterized protein.
   
 0.969
Csa_3G182240
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.969
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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