STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_3G172950ANK_REP_REGION domain-containing protein. (479 aa)    
Predicted Functional Partners:
Csa_5G139050
MPN domain-containing protein.
   
 0.915
Csa_1G701220
Uncharacterized protein.
   
 0.909
Csa_7G209540
OTU domain-containing protein.
   
 0.890
Csa_1G264000
PRKCSH domain-containing protein.
    
 0.874
Csa_3G732570
Ataxin-3.
    
 0.846
Csa_3G824780
U-box domain-containing protein.
   
 
 0.827
Csa_3G146470
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.819
Csa_5G259720
Uncharacterized protein.
    
 0.806
Csa_5G259710
Uncharacterized protein.
    
 0.806
Csa_6G514810
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.763
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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