Csa_3G733870 protein (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Csa_3G733870

Uncharacterized protein. (585 aa)

Predicted Functional Partners:

Csa_1G615710

0.519

Csa_1G496300

0.482

Csa_6G301040

0.465

Csa_1G073680

0.462

Csa_5G606320

0.459

Csa_1G265090

0.455

Csa_2G035540

0.454

Csa_7G268480

0.454

Csa_3G040870

0.437

Csa_2G368900

0.429

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G073680	Csa_1G265090	A0A0A0LRV8	A0A0A0LW48	Uncharacterized protein.	Uncharacterized protein.	0.506
Csa_1G073680	Csa_1G496300	A0A0A0LRV8	A0A0A0LV90	Uncharacterized protein.	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.530
Csa_1G073680	Csa_1G615710	A0A0A0LRV8	A0A0A0LXP1	Uncharacterized protein.	Uncharacterized protein.	0.455
Csa_1G073680	Csa_2G035540	A0A0A0LRV8	A0A0A0LJ38	Uncharacterized protein.	Uncharacterized protein.	0.510
Csa_1G073680	Csa_3G733870	A0A0A0LRV8	A0A0A0LAF2	Uncharacterized protein.	Uncharacterized protein.	0.462
Csa_1G073680	Csa_5G606320	A0A0A0LRV8	A0A0A0KQP3	Uncharacterized protein.	SET domain protein.	0.507
Csa_1G073680	Csa_6G301040	A0A0A0LRV8	A0A0A0KES2	Uncharacterized protein.	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.524
Csa_1G265090	Csa_1G073680	A0A0A0LW48	A0A0A0LRV8	Uncharacterized protein.	Uncharacterized protein.	0.506
Csa_1G265090	Csa_1G496300	A0A0A0LW48	A0A0A0LV90	Uncharacterized protein.	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.497
Csa_1G265090	Csa_1G615710	A0A0A0LW48	A0A0A0LXP1	Uncharacterized protein.	Uncharacterized protein.	0.473
Csa_1G265090	Csa_2G035540	A0A0A0LW48	A0A0A0LJ38	Uncharacterized protein.	Uncharacterized protein.	0.506
Csa_1G265090	Csa_3G733870	A0A0A0LW48	A0A0A0LAF2	Uncharacterized protein.	Uncharacterized protein.	0.455
Csa_1G265090	Csa_5G606320	A0A0A0LW48	A0A0A0KQP3	Uncharacterized protein.	SET domain protein.	0.495
Csa_1G265090	Csa_6G301040	A0A0A0LW48	A0A0A0KES2	Uncharacterized protein.	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.489
Csa_1G265090	Csa_7G268480	A0A0A0LW48	U5Y0Q9	Uncharacterized protein.	BTB/POZ domain-containing protein Atg63850-like protein FDI1.	0.406
Csa_1G496300	Csa_1G073680	A0A0A0LV90	A0A0A0LRV8	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.530
Csa_1G496300	Csa_1G265090	A0A0A0LV90	A0A0A0LW48	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.497
Csa_1G496300	Csa_1G615710	A0A0A0LV90	A0A0A0LXP1	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.414
Csa_1G496300	Csa_2G035540	A0A0A0LV90	A0A0A0LJ38	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.512
Csa_1G496300	Csa_3G733870	A0A0A0LV90	A0A0A0LAF2	Glyco_hydro_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.482