STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_3G881580AA_TRNA_LIGASE_II domain-containing protein. (545 aa)    
Predicted Functional Partners:
Csa_2G120970
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.995
Csa_4G000540
AA_TRNA_LIGASE_II domain-containing protein.
  
0.946
Csa_1G561380
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.925
Csa_4G013540
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.896
Csa_5G126710
HGTP_anticodon domain-containing protein.
  
 0.893
Csa_4G015750
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.893
Csa_3G213510
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.893
Csa_1G084310
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.885
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.876
Csa_2G247610
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.852
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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