STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_2G148430DRIM domain-containing protein. (2678 aa)    
Predicted Functional Partners:
Csa_4G022980
BP28CT domain-containing protein.
  
 0.988
Csa_4G553660
Uncharacterized protein.
   
 0.980
Csa_6G367110
Uncharacterized protein.
   
 0.978
Csa_7G397580
Uncharacterized protein.
   
 0.974
Csa_7G237820
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.967
Csa_2G070230
WD_REPEATS_REGION domain-containing protein.
   
 0.966
Csa_2G385060
WD_REPEATS_REGION domain-containing protein.
   
 0.965
Csa_4G004810
WD_REPEATS_REGION domain-containing protein.
   
 0.962
Csa_2G279240
WD_REPEATS_REGION domain-containing protein.
   
 0.962
Csa_6G087170
Sas10 domain-containing protein.
   
 0.961
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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