STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_2G010230Uncharacterized protein. (509 aa)    
Predicted Functional Partners:
Csa_4G129020
Nuclear cap-binding protein subunit 2.
    
 0.566
Csa_1G616300
MIF4G domain-containing protein.
    
 0.552
Csa_7G432440
MPN domain-containing protein.
   
   0.521
Csa_6G081470
Uncharacterized protein.
    
 0.499
Csa_1G588520
WD_REPEATS_REGION domain-containing protein.
    
 
 0.481
Csa_3G166240
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.477
Csa_2G093850
RPOLD domain-containing protein.
   
 
  0.470
Csa_6G052670
RRM domain-containing protein.
    
 0.445
Csa_7G252650
Uncharacterized protein.
    
 
 0.442
Csa_4G437530
FRIGIDA-like protein; Belongs to the Frigida family.
      
 0.429
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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