STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_3G912980Uncharacterized protein. (51 aa)    
Predicted Functional Partners:
Csa_5G198130
Uncharacterized protein.
   
 0.974
Csa_6G397690
C2H2-type domain-containing protein.
   
 
 0.972
Csa_6G309950
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.964
Csa_3G182240
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.962
Csa_3G653380
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.961
Csa_1G589640
Uncharacterized protein.
   
 
 0.955
Csa_1G021920
Uncharacterized protein.
   
 
 0.954
Csa_6G135990
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.952
Csa_3G073850
Uncharacterized protein.
   
 
 0.950
Csa_2G120410
Uncharacterized protein.
   
 0.939
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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