STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_2G370440PHD_Oberon domain-containing protein. (616 aa)    
Predicted Functional Partners:
Csa_7G380130
Uncharacterized protein.
  
     0.523
Csa_4G288100
PLAT domain-containing protein.
  
     0.489
Csa_5G606800
Usp domain-containing protein.
  
     0.477
Csa_3G002970
BHLH domain-containing protein.
  
     0.459
Csa_3G841990
Uncharacterized protein.
  
     0.458
Csa_1G062300
Uncharacterized protein.
  
     0.458
Csa_2G277000
Uncharacterized protein.
  
     0.452
Csa_3G485860
BHLH domain-containing protein.
  
     0.446
Csa_1G505940
Uncharacterized protein.
  
     0.445
Csa_6G191280
Uncharacterized protein.
  
     0.442
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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