STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csa_1G424880Uncharacterized protein. (714 aa)    
Predicted Functional Partners:
Csa_6G491700
MRG domain-containing protein.
    
 
 0.826
Csa_4G641700
MRG domain-containing protein.
    
 
 0.826
Csa_5G207920
Uncharacterized protein.
   
 
 0.706
Csa_5G579010
Uncharacterized protein.
   
 
 0.706
Csa_5G484650
HDAC_interact domain-containing protein.
   
 
 0.690
Csa_5G603960
WRKY domain class transcription factor.
   
 
 0.690
Csa_7G012400
WD_REPEATS_REGION domain-containing protein.
    
 
 0.653
Csa_3G127190
WD_REPEATS_REGION domain-containing protein.
    
 
 0.653
Csa_1G588520
WD_REPEATS_REGION domain-containing protein.
    
 
 0.653
Csa_7G029990
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.620
Your Current Organism:
Cucumis sativus
NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.