STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0045Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01110 DNA-binding protein. (139 aa)    
Predicted Functional Partners:
Smed_2277
TIGRFAM: conserved hypothetical membrane protein; KEGG: sme:SMc02705 hypothetical protein.
  
   
 0.675
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.645
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
   
 0.641
Smed_2278
KEGG: sme:SMc02706 hypothetical protein.
  
     0.632
Smed_2246
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sme:SMc01595 putative sensor histidine kinase transmembrane protein.
  
     0.630
Smed_2539
KEGG: sme:SMc00722 hypothetical protein.
  
     0.610
HolA
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: sme:SMc02802 putative DNA polymerase III, delta subunit.
  
     0.600
Smed_2276
PFAM: protein of unknown function DUF58; KEGG: sme:SMc02704 hypothetical protein.
  
     0.576
Smed_0767
PFAM: DNA polymerase III chi subunit HolC; KEGG: sme:SMc00586 putative DNA polymerase III chi subunit.
  
     0.569
Smed_0410
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMc00910 hypothetical protein.
  
     0.554
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.