STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_0158KEGG: sme:SMc02242 hypothetical protein. (88 aa)    
Predicted Functional Partners:
Smed_0159
PFAM: SCP-like extracellular; KEGG: sme:SMc02243 hypothetical protein.
       0.800
Smed_1055
KEGG: sme:SMc01011 hypothetical protein.
  
     0.761
Smed_2604
KEGG: sme:SMc00655 hypothetical protein.
  
     0.752
Smed_1111
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.749
Smed_0517
PFAM: Invasion associated locus B family protein; KEGG: sme:SMc00071 hypothetical protein.
  
     0.742
Smed_0048
PFAM: protein of unknown function DUF1150; KEGG: sme:SMc01107 hypothetical protein.
  
     0.718
Smed_0022
KEGG: sme:SMc01133 hypothetical protein.
  
     0.714
Smed_0709
KEGG: sme:SMc02555 conserved hypothetical signal peptide protein.
  
     0.712
Smed_0624
KEGG: sme:SMc00128 hypothetical protein.
  
     0.710
Smed_2709
PFAM: protein of unknown function DUF459; KEGG: sme:SMc04025 hypothetical protein.
  
     0.693
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.