Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smed_0177 | Smed_0178 | Smed_0177 | Smed_0178 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | 0.874 |
Smed_0177 | Smed_0179 | Smed_0177 | Smed_0179 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | 0.875 |
Smed_0177 | Smed_0180 | Smed_0177 | Smed_0180 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | KEGG: sme:SMc02264 hypothetical protein. | 0.441 |
Smed_0178 | Smed_0177 | Smed_0178 | Smed_0177 | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | 0.874 |
Smed_0178 | Smed_0179 | Smed_0178 | Smed_0179 | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | 0.905 |
Smed_0178 | Smed_0180 | Smed_0178 | Smed_0180 | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | KEGG: sme:SMc02264 hypothetical protein. | 0.455 |
Smed_0179 | Smed_0177 | Smed_0179 | Smed_0177 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | 0.875 |
Smed_0179 | Smed_0178 | Smed_0179 | Smed_0178 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | 0.905 |
Smed_0179 | Smed_0180 | Smed_0179 | Smed_0180 | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | KEGG: sme:SMc02264 hypothetical protein. | 0.455 |
Smed_0180 | Smed_0177 | Smed_0180 | Smed_0177 | KEGG: sme:SMc02264 hypothetical protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc02261 putative transcription regulator protein. | 0.441 |
Smed_0180 | Smed_0178 | Smed_0180 | Smed_0178 | KEGG: sme:SMc02264 hypothetical protein. | PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sme:SMc02262 putative aminotransferase protein. | 0.455 |
Smed_0180 | Smed_0179 | Smed_0180 | Smed_0179 | KEGG: sme:SMc02264 hypothetical protein. | PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sme:SMc02263 acetolactate synthase large subunit; Belongs to the TPP enzyme family. | 0.455 |
Smed_0180 | secD | Smed_0180 | Smed_0181 | KEGG: sme:SMc02264 hypothetical protein. | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.531 |
secD | Smed_0180 | Smed_0181 | Smed_0180 | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | KEGG: sme:SMc02264 hypothetical protein. | 0.531 |